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Seminars in Radiation Oncology
Volume 18, Issue 2
, Pages 105-114
, April 2008
Using Microarray Analysis as a Prognostic and Predictive Tool in Oncology: Focus on Breast Cancer and Normal Tissue Toxicity
References
- . Exploring the new world of the genome with DNA microarrays. Nat Genet. 1999;21:33–37
- Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science. 1995;270:467–470
- Use of a cDNA microarray to analyse gene expression patterns in human cancer. Nat Genet. 1996;14:457–460
- Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci U S A. 1998;95:14863–14868
- . Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci U S A. 2001;98:5116–5121
- Diagnosis of multiple cancer types by shrunken centroids of gene expression. Proc Natl Acad Sci U S A. 2002;99:6567–6572
- . Semi-supervised methods to predict patient survival from gene expression data. PLoS Biol. 2004;2:E108
- . Prediction of cancer outcome with microarrays: A multiple random validation strategy. Lancet. 2005;365:488–492
- Constitutive mRNA expression of DNA repair-related genes as a biomarker for clinical radio-resistance: A pilot study in prostate cancer patients receiving radiotherapy. Int J Radiat Biol. 2006;82:593–604
- Analysis of gene expression using gene sets discriminates cancer patients with and without late radiation toxicity. PLoS Med. 2006;3:e422
- Gene expression profile in human late radiation enteritis obtained by high-density cDNA array hybridization. Radiat Res. 2004;161:299–311
- Prediction of outcome of advanced cervical cancer to thermoradiotherapy according to expression profiles of 35 genes selected by cDNA microarray analysis. Int J Radiat Oncol Biol Phys. 2004;60:237–248
- Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring. Science. 1999;286:531–537
- . Classification of sensitivity or resistance of cervical cancers to ionizing radiation according to expression profiles of 62 genes selected by cDNA microarray analysis. Neoplasia. 2002;4:295–303
- Radiation-induced effects on gene expression: An in vivo study on breast cancer. Radiother Oncol. 2006;80:230–235
- . Is the benefit of postmastectomy irradiation limited to patients with four or more positive nodes, as recommended in international consensus reports? (A subgroup analysis of the DBCG 82 b&c randomized trials). Radiother Oncol. 2007;82:247–253
- . The use of radiotherapy after mastectomy: A review of the literature. J Clin Oncol. 2005;23:1706–1717
- Genomic prediction of locoregional recurrence after mastectomy in breast cancer. J Clin Oncol. 2006;24:4594–4602
- Gene expression profiles of primary breast carcinomas from patients at high risk for local recurrence after breast-conserving therapy. Clin Cancer Res. 2006;12:5705–5712
- Predicting a local recurrence after breast-conserving therapy by gene expression profiling. Breast Cancer Res. 2006;8:R62
- Gene expression signature of fibroblast serum response predicts human cancer progression: Similarities between tumors and wounds. PLoS Biol. 2004;2:E7
- Gene expression programs in response to hypoxia: Cell type specificity and prognostic significance in human cancers. PLoS Med. 2006;3:e47
- Gene expression profiling predicts clinical outcome of breast cancer. Nature. 2002;415:530–536
- Effect of preoperative chemotherapy on the outcome of women with operable breast cancer. J Clin Oncol. 1998;16:2672–2685
- Gene expression profiles derived from fine needle aspiration correlate with response to systemic chemotherapy in breast cancer. Breast Cancer Res. 2002;4:R3
- Gene expression profiling for the prediction of therapeutic response to docetaxel in patients with breast cancer. Lancet. 2003;362:362–369
- Pharmacogenomic predictor of sensitivity to preoperative chemotherapy with paclitaxel and fluorouracil, doxorubicin, and cyclophosphamide in breast cancer. J Clin Oncol. 2006;24:4236–4244
- Changes in gene expression associated with response to neoadjuvant chemotherapy in breast cancer. J Clin Oncol. 2005;23:3331–3342
- Genomic signatures to guide the use of chemotherapeutics. Nat Med. 2006;12:1294–1300
- A gene-expression signature as a predictor of survival in breast cancer. N Engl J Med. 2002;347:1999–2009
- Validation and clinical utility of a 70-gene prognostic signature for women with node-negative breast cancer. J Natl Cancer Inst. 2006;98:1183–1192
- . http://www.eortc.be/services/unit/mindact/MINDACT_websiteii.aspAccessed November 29, 2007
- Adjuvant! Online. http://www.adjuvantonline.coAccessed
- Gene expression profiling in breast cancer: Understanding the molecular basis of histologic grade to improve prognosis. J Natl Cancer Inst. 2006;98:262–272
- Gene-expression profiles to predict distant metastasis of lymph-node-negative primary breast cancer. Lancet. 2005;365:671–679
- Multicenter validation of a gene expression-based prognostic signature in lymph node-negative primary breast cancer. J Clin Oncol. 2006;24:1665–1671
- Strong time dependence of the 76-gene prognostic signature for node-negative breast cancer patients in the TRANSBIG Multicenter Independent Validation Series. Clin Cancer Res. 2007;13:3207–3214
- . Proliferation: The most prominent predictor of clinical outcome in breast cancer. Cell Cycle. 2006;5:2198–2202
- Concordance among gene-expression-based predictors for breast cancer. N Engl J Med. 2006;355:560–569
- A multigene assay to predict recurrence of tamoxifen-treated, node-negative breast cancer. N Engl J Med. 2004;351:2817–2826
- The molecular portraits of breast tumors are conserved across microarray platforms. BMC Genomics. 2006;7:96
- Molecular portraits of human breast tumours. Nature. 2000;406:747–752
- Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications. Proc Natl Acad Sci U S A. 2001;98:10869–10874
- Repeated observation of breast tumor subtypes in independent gene expression data sets. Proc Natl Acad Sci U S A. 2003;100:8418–8423
- Robustness, scalability, and integration of a wound-response gene expression signature in predicting breast cancer survival. Proc Natl Acad Sci U S A. 2005;102:3738–3743
- A two-gene expression ratio predicts clinical outcome in breast cancer patients treated with tamoxifen. Cancer Cell. 2004;5:607–616
- Distinctive gene expression patterns in human mammary epithelial cells and breast cancers. Proc Natl Acad Sci U S A. 1999;96:9212–9217
- . Tumors: Wounds that do not heal (Similarities between tumor stroma generation and wound healing). N Engl J Med. 1986;315:1650–1659
- . Exploiting tumour hypoxia in cancer treatment. Nat Rev Cancer. 2004;4:437–447
- Genetic regulators of large-scale transcriptional signatures in cancer. Nat Genet. 2006;38:421–430
PII: S1053-4296(07)00098-7
doi: 10.1016/j.semradonc.2007.10.007
© 2008 Elsevier Inc. All rights reserved.
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Seminars in Radiation Oncology
Volume 18, Issue 2
, Pages 105-114
, April 2008
